Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
etfA-7Electron transfer flavoprotein, alpha subunit. (305 aa)    
Predicted Functional Partners:
etfB-7
Electron transfer flavoprotein, beta subunit.
 0.986
Gbem_2832
Short-chain acyl-CoA dehydrogenase.
 
 0.952
etfB-5
Electron transfer flavoprotein, beta subunit.
 0.947
Gbem_1469
Electron transfer flavoprotein, beta subunit.
 0.946
etfB-6
Electron transfer flavoprotein, beta subunit.
 0.943
etfB-1
Electron transfer flavoprotein, beta subunit.
 0.942
etfB-2
Electron transfer flavoprotein, beta subunit.
 0.940
etfB-3
Electron transfer flavoprotein, beta subunit.
 0.939
Gbem_2126
enoyl-CoA hydratase and 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.902
fadE
Very-long-chain acyl-CoA dehydrogenase.
 
 0.896
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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