STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_2837Nitroreductase-like family 3 protein. (194 aa)    
Predicted Functional Partners:
Gbem_2836
Aminopeptidase, putative.
 
  
 0.837
birA
Biotin operon repressor and biotin--acetyl-CoA carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.807
ybhR
ABC transporter, membrane protein.
  
  
 0.583
ybhS
ABC transporter, membrane protein.
  
  
 0.583
Gbem_0302
[acyl-]glycerolphosphate acyltransferase and acyl-(acyl carrier protein) ligase, major facilitator superfamily domain-containing.
   
 
 0.568
icmF
Cobalamin-binding protein kinase (ArgK) (R)-methylmalonyl-CoA mutase fusion; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
     
 0.560
ribA-1
3,4-dihydroxy-2-butanone-4-phosphate synthase and GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.560
Gbem_1765
Protease, Abi superfamily, putative.
  
  
 0.554
Gbem_2106
Flavin oxidoreductase, PfaD family, putative.
  
 
 0.552
mceE
methylmalonyl-CoA epimerase.
  
  
 0.520
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.