STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_2861CsbD family protein; Belongs to the UPF0337 (CsbD) family. (71 aa)    
Predicted Functional Partners:
Gbem_0127
Protein of unknown function DUF1328.
  
  
 0.869
Gbem_1671
Phospholipid-binding BON domain protein.
 
  
 0.791
Gbem_2146
Protein of unknown function DUF500.
  
    0.776
Gbem_3182
Protein of unknown function DUF500.
  
    0.776
Gbem_0454
Hypothetical protein.
 
    0.720
Gbem_0142
Hypothetical protein.
  
    0.620
Gbem_0986
Phospholipid-binding domain protein, putative.
  
  
 0.594
Gbem_1481
Hypothetical protein.
  
  
 0.582
Gbem_1769
Periplasmic polysaccharide biosynthesis/export protein.
  
    0.582
Gbem_2966
Lipoprotein, putative.
  
  
 0.578
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.