STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_2931Sensor diguanylate cyclase, DUF3365-containing, heme-binding; Domains: DUF3365, GGDEF. (432 aa)    
Predicted Functional Partners:
Gbem_3173
Cyclic diguanylate phosphodiesterase, HAMP domain-containing; Domains: HAMP, HD-GYP.
 
 0.958
Gbem_1227
Sensor histidine kinase response regulator, Cache_1, HAMP, PAS, PAS and HPT domain-containing; Domains: Cache_1, HAMP, PAS, PAS, HisKA, HATPase_c, REC, HPT.
 
 0.919
Gbem_0379
Sensor histidine kinase response regulator, PAS domain-containing; Domains: PAS, HisKA, HATPase_c, REC.
 
 0.908
Gbem_3275
Sensor histidine kinase response regulator, PAS domain-containing; Domains: PAS, HisKA, HATPase_c, REC.
 
 0.905
Gbem_2536
Sensor histidine kinase, CHASE, PAS and PAS domain-containing; Domains: CHASE, PAS, PAS, HisKA, HATPase_c.
 
 
 0.904
Gbem_0065
Response receiver histidine kinase response regulator; Domains: REC, HisKA, HATPase_c, REC.
 
 0.898
Gbem_1505
Sensor histidine kinase response regulator, HAMP and Hpt domain-containing; Domains: HAMP, HisKA, HATPase_c, REC, Hpt.
 
 0.887
Gbem_0811
Sensor histidine kinase response regulator, Hpt domain-containing; Domains: HisKA, HATPase_c, REC, Hpt.
 
 0.878
Gbem_3181
Sensor histidine kinase response regulator, HAMP and Hpt domain-containing; Domains: HAMP, HisKA, HATPase_c, REC, Hpt.
 
 0.877
Gbem_2137
Domains: Cache_1, PAS, PAS, PAS, PAS, HisKA, HATPase_c, REC.
 
 
 0.851
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.