STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_3053Dystroglycan-type cadherin-like domain repeat protein. (3244 aa)    
Predicted Functional Partners:
Gbem_3055
Serine protease, subtilase family; Belongs to the peptidase S8 family.
  
  
 0.754
Gbem_3054
Peptidylprolyl cis-trans isomerase, PpiC-type.
     
 0.706
fliN
Flagellar motor switch protein FliN.
   
 
 0.624
Gbem_3098
Competence protein, ComEC-related, putative.
  
  
 0.565
Gbem_2629
Efflux pump, RND family, outer membrane protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
  
  
 0.562
Gbem_3853
Efflux pump, RND family, outer membrane protein.
  
  
 0.562
Gbem_1552
Lipoprotein, putative.
 
 
0.538
Gbem_3052
Cytochrome c; 31 heme-binding sites.
       0.520
Gbem_0278
Hypothetical protein.
  
  
 0.509
Gbem_4020
Glycoside hydrolase and dTDP-4-dehydrorhamnose reductase, putative; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
 
 0.503
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.