STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_3080Zinc metalloendopeptidase, M23 family. (241 aa)    
Predicted Functional Partners:
Gbem_0079
Biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors. Belongs to the glycosyltransferase 51 family.
  
   
 0.621
mrcA
Peptidoglycan transglycosylase and transpeptidase MrcA.
  
   
 0.587
Gbem_3502
Membrane transglycosylase and transpeptidase PBP1A.
  
   
 0.580
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.514
Gbem_2437
Cell division protein, SpoIID family, putative.
 
   
 0.485
ftsX
Cell division ABC transporter, membrane protein FtsX, putative; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.454
Gbem_1752
N-acetylmuramyl-L-alanine amidase.
 
   
 0.445
Gbem_0896
Protein of unknown function, LysM, LysM and NLPC_P60 domain-containing; Domains: LysM, LysM, NLPC_P60.
  
  
 0.441
Gbem_3368
NLPC_P60 superfamily protein.
  
  
 0.441
fliM
Flagellar motor switch protein FliM.
    
 
 0.427
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.