STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_3176Outer membrane surface protein. (601 aa)    
Predicted Functional Partners:
Gbem_3175
Protein of unknown function, DUF490-containing.
 
 
 0.997
pcnB
Nucleic acid-independent polyadenylating polymerase; Adds poly(A) tail to the 3' end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control. Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
     0.582
lptD
Lipopolysaccharide biogenesis outer membrane protein LptD, putative; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.526
Gbem_2449
Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein.
   
    0.505
manB
Phosphomannomutase.
  
  
 0.490
lpxH
UDP-2,3-diacylglucosamine hydrolase; UDP-N-2, O-3-di-(3-hydroxyacyl)glucosamine/UDP-N-2, N-3-di-(3-hydroxyacyl)glucosediamine pyrophosphatase.
 
     0.455
kdsD
Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
  
    0.447
Gbem_1323
Hypothetical protein.
  
     0.440
pilY1-3
Type IV pilus assembly protein PilY1.
  
     0.413
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.