STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
Experiments
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[Homology]
Score
Gbem_3206PSP1 superfamily protein. (312 aa)    
Predicted Functional Partners:
rny
Endoribonuclease Y; Endoribonuclease that initiates mRNA decay.
 
  
 0.897
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.823
holB
DNA polymerase III, delta-prime subunit.
  
   0.646
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.602
pyrK
Dihydroorotate dehydrogenase, electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
 
  
 0.592
flgJ
Flagellar rod-binding protein FlgJ.
   
   0.532
Gbem_3202
Radical SAM domain iron-sulfur cluster-binding oxidoreductase.
 
     0.529
fliE
Flagellar hook-basal body complex protein FliE.
   
   0.472
flgD
Flagellar hook capping protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.458
Gbem_0379
Sensor histidine kinase response regulator, PAS domain-containing; Domains: PAS, HisKA, HATPase_c, REC.
 
 
 
 0.448
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.