STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_3230Protein of unknown function, DUF523 and DUF1722. (316 aa)    
Predicted Functional Partners:
Gbem_3405
Sensor histidine kinase, GAF domain-containing; Domains: GAF, HisKA, HATPase_c.
   
    0.922
Gbem_3229
Electron transfer flavoprotein-associated cytochrome b and CCG domain pair iron-sulfur cluster-binding oxidoreductase.
       0.620
Gbem_1158
Lipoprotein, putative.
   
    0.482
Gbem_0255
SpoVR-like family protein.
   
    0.453
Gbem_2514
FAD-dependent pyridine nucleotide-disulfide oxidoreductase family protein.
   
   0.447
trxB
Thioredoxin reductase.
   
   0.447
Gbem_3231
Sensor histidine kinase response regulator, PAS domain-containing; Domains: PAS, HisKA, HATPase_c, REC.
  
    0.440
hisE
phosphoribosyl-ATP pyrophosphohydrolase.
  
    0.408
Gbem_1414
acyl-CoA synthetase, ADP-forming.
  
  
 0.404
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.