STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdACytochrome c biogenesis protein CcdA. (238 aa)    
Predicted Functional Partners:
resA
Apocytochrome c disulfide reductase lipoprotein ResA.
  
 0.981
Gbem_3410
Glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein.
       0.637
Gbem_3413
Sigma-54-dependent transcriptional response regulator; Domains: REC, sigma54 interaction, HTH8.
       0.605
Gbem_0406
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.564
Gbem_3967
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.560
Gbem_1161
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.552
Gbem_2871
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.551
Gbem_3453
ResC/HemX-like cytochrome c biogenesis membrane protein.
 
  
 0.551
Gbem_3454
ResB-like family cytochrome c biogenesis protein.
 
  
 0.506
hemD
Uroporphyrinogen III C2,C7-methyltransferase and uroporphyrinogen III synthase.
  
    0.455
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.