STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_3606Formate/nitrite transporter family protein. (284 aa)    
Predicted Functional Partners:
Gbem_1148
Carbonic anhydrase, beta-family, clade C.
  
  
 0.787
Gbem_1887
Carbonic anhydrase, beta-family, clade D.
  
  
 0.787
can
Carbonic anhydrase, beta-family, clade B.
  
  
 0.787
Gbem_3603
Hypothetical protein.
       0.639
Gbem_3604
Protein of unknown function DUF37.
       0.639
Gbem_3605
TPR domain protein.
       0.639
Gbem_2852
Diacylglycerol kinase-related protein.
 
  
 0.638
actB
Menaquinol oxidoreductase complex ACIII, molybdopterin-binding-like and iron-sulfur cluster-binding subunit ActB; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.633
Gbem_0161
Ferredoxin, Rieske superfamily.
  
  
 0.629
gltB
NADPH-dependent glutamate synthase, glutamine amidotransferase and FMN-binding subunit.
   
  
 0.565
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.