STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_3624Periplasmic metal-binding protein; Belongs to the bacterial solute-binding protein 9 family. (303 aa)    
Predicted Functional Partners:
Gbem_3621
Manganese/iron transport system permease protein; Divalent manganese/zinc ABC transporter, membrane protein and metal-binding helix-turn-helix transcriptional repressor.
  
 0.996
Gbem_3622
Divalent manganese/zinc ABC transporter, ATP-binding protein.
 
  
 0.990
Gbem_3532
Divalent manganese/zinc ABC transporter, membrane protein.
  
 0.969
Gbem_3533
Divalent manganese/zinc ABC transporter, ATP-binding protein.
 
  
 0.917
Gbem_3623
Hypothetical protein.
       0.752
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.600
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.584
ideR
Iron/manganese-dependent transcriptional regulator.
  
  
 0.582
Gbem_2106
Flavin oxidoreductase, PfaD family, putative.
  
  
 0.532
Gbem_3620
Endonuclease DUF559, putative.
       0.490
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.