STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_4020Glycoside hydrolase and dTDP-4-dehydrorhamnose reductase, putative; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (730 aa)    
Predicted Functional Partners:
rmlB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.989
Gbem_2463
Nucleoside diphosphate-sugar dehydratase, putative.
  
 
 0.984
rmlA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.962
Gbem_1683
NAD-dependent nucleoside diphosphate-sugar epimerase/dehydratase.
 
 0.951
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
 
0.933
wbjC
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase; UDP-2-acetamido-2, 6-dideoxy-beta-L-arabino-4-hexulose 3-epimerase and UDP-2-acetamido-2,6-dideoxy-beta-L-lyxo-4-hexulose 4-reductase.
  
 
 0.932
fdtC/fdtA
dTDP-3-amino-3,6-dideoxy-D-galactose N-acetyltransferase and dTDP-6-deoxy-D-hex-4-ulose isomerase.
  
  
 0.916
galK
Galactose 1-kinase; Belongs to the GHMP kinase family. GalK subfamily.
 
   
 0.907
Gbem_4015
Glycoside hydrolase, family 2; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.887
tyv
CDP-paratose 2-epimerase.
 
  
 0.885
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.