STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gbem_4139Hypothetical protein. (54 aa)    
Predicted Functional Partners:
Gbem_3491
Hypothetical protein.
       0.773
dnaB-2
Replicative DNA helicase.
       0.773
Gbem_3493
Hypothetical protein.
       0.773
Gbem_3494
Hypothetical protein.
       0.773
Gbem_3495
Hypothetical protein.
       0.773
Gbem_4138
Hypothetical protein.
       0.773
Gbem_3486
Hypothetical protein.
       0.596
Gbem_3487
Radical SAM domain iron-sulfur cluster-binding oxidoreductase.
       0.596
Gbem_3488
Radical SAM domain iron-sulfur cluster-binding oxidoreductase with cobalamin-binding-like domain.
       0.596
Gbem_3489
Hypothetical protein.
       0.596
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.