OLO05604.1 protein (Salinicola socius) - STRING interaction network

Nodes:

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

OLO05604.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)

Predicted Functional Partners:

OLO05603.1

0.994

OLO05600.1

0.985

OLO05602.1

0.887

OLO05601.1

0.847

OLO05072.1

0.798

OLO05605.1

0.648

Your Current Organism:

Salinicola socius

NCBI taxonomy Id: 404433
Other names: DSM 19940, S. socius, VKM B-2397, strain SMB35

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OLO05072.1	OLO05601.1	BTW07_05505	BTW07_03780	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
OLO05072.1	OLO05602.1	BTW07_05505	BTW07_03785	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
OLO05072.1	OLO05603.1	BTW07_05505	BTW07_03790	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
OLO05072.1	OLO05604.1	BTW07_05505	BTW07_03795	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
OLO05072.1	OLO05605.1	BTW07_05505	BTW07_03800	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
OLO05600.1	OLO05601.1	BTW07_03775	BTW07_03780	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
OLO05600.1	OLO05602.1	BTW07_03775	BTW07_03785	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
OLO05600.1	OLO05603.1	BTW07_03775	BTW07_03790	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
OLO05600.1	OLO05604.1	BTW07_03775	BTW07_03795	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
OLO05600.1	OLO05605.1	BTW07_03775	BTW07_03800	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
OLO05601.1	OLO05072.1	BTW07_03780	BTW07_05505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
OLO05601.1	OLO05600.1	BTW07_03780	BTW07_03775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
OLO05601.1	OLO05602.1	BTW07_03780	BTW07_03785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
OLO05601.1	OLO05603.1	BTW07_03780	BTW07_03790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.836
OLO05601.1	OLO05604.1	BTW07_03780	BTW07_03795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
OLO05601.1	OLO05605.1	BTW07_03780	BTW07_03800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
OLO05602.1	OLO05072.1	BTW07_03785	BTW07_05505	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
OLO05602.1	OLO05600.1	BTW07_03785	BTW07_03775	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
OLO05602.1	OLO05601.1	BTW07_03785	BTW07_03780	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
OLO05602.1	OLO05603.1	BTW07_03785	BTW07_03790	IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891

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Network Stats

number of nodes:

4

number of edges:

6

average node degree:

3

avg. local clustering coefficient:

1

expected number of edges:

3

PPI enrichment p-value:

0.0522

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006526

Arginine biosynthetic process

5 of 7

2.1

2.85

1.28e-06

GO:1901607

Alpha-amino acid biosynthetic process

7 of 53

1.37

1.76

2.27e-06

GO:0006520

Cellular amino acid metabolic process

8 of 138

1.01

1.07

1.15e-05

GO:0006591

Ornithine metabolic process

2 of 4

1.95

0.95

0.0150

GO:0019752

Carboxylic acid metabolic process

9 of 213

0.87

1.15e-05

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

11 of 621

0.5

0.42

0.00037

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:551

Ribonucleoside monophosphate biosynthetic process, and Arginine biosynthesis

7 of 50

1.39

1.95

3.25e-07

CL:550

Mixed, incl. Ribonucleoside monophosphate biosynthetic process, and Alanine, aspartate and glutamate metabolism

9 of 85

1.27

1.84

1.67e-08

CL:641

Arginine metabolic process

3 of 5

2.03

1.67

0.00051

CL:552

Ribonucleoside monophosphate biosynthetic process, and glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity

4 of 45

1.2

0.85

0.0059

CL:554

Ribonucleoside monophosphate biosynthetic process

3 of 21

1.4

0.85

0.0126

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00250

Alanine, aspartate and glutamate metabolism

6 of 31

1.53

2.11

1.24e-06

map00220

Arginine biosynthesis

4 of 14

1.7

1.81

7.63e-05

map01230

Biosynthesis of amino acids

5 of 108

0.91

0.67

0.0049

map01110

Biosynthesis of secondary metabolites

7 of 280

0.65

0.47

0.0051

map01100

Metabolic pathways

11 of 676

0.46

0.39

0.00030

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005737

Cytoplasm

10 of 435

0.61

0.5

0.00060

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0055

Arginine biosynthesis

4 of 4

2.25

2.67

5.57e-06

KW-0028

Amino-acid biosynthesis

5 of 28

1.5

1.71

3.19e-05

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