STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLO05231.1Tricarboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)    
Predicted Functional Partners:
OLO05230.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.918
OLO05229.1
Tricarboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.908
OLO06173.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.827
OLO04899.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.827
OLO03951.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.827
OLO03223.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.826
OLO04589.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.824
OLO04481.1
Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.824
OLO04681.1
Tricarboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.823
OLO02879.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.823
Your Current Organism:
Salinicola socius
NCBI taxonomy Id: 404433
Other names: DSM 19940, S. socius, VKM B-2397, strain SMB35
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