STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLO03352.1Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)    
Predicted Functional Partners:
OLO03353.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
OLO03351.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.757
OLO03436.1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.587
OLO05122.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.531
OLO03344.1
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.528
OLO03354.1
Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
OLO03355.1
Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
OLO03339.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.443
OLO05110.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.439
OLO03350.1
GPO family capsid scaffolding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.420
Your Current Organism:
Salinicola socius
NCBI taxonomy Id: 404433
Other names: DSM 19940, S. socius, VKM B-2397, strain SMB35
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.