STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrmLRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)    
Predicted Functional Partners:
AQU77478.1
Non-canonical purine NTP pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.794
Cof
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.785
rsmB
Guanylate kinase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.606
nadD
5'-methylthioadenosine nucleosidase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
     
 0.587
tadA
tRNA-specific adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.539
mnmE
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
     
 0.529
truA
tRNA pseudouridine(38-40) synthase TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
     
 0.523
mnmG
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
     
 0.518
HrcA
HrcA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.506
GrpE
Nucleotide exchange factor GrpE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.492
Your Current Organism:
Mycoplasma capricolum
NCBI taxonomy Id: 40480
Other names: F38 group of mycoplasmas, F38-type caprine mycoplasmas, M. capricolum subsp. capripneumoniae, Mycoplasma capricolum capripneumoniae, Mycoplasma capricolum subsp. capripneumoniae, Mycoplasma sp. JKGM01, NCTC 10192, strain F38
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