STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002013645_01657Unannotated protein. (62 aa)    
Predicted Functional Partners:
limB_4
Unannotated protein.
 
     0.906
GCA_002013645_01659
Unannotated protein.
 
  
 0.839
GCA_002013645_04576
Unannotated protein.
 
  
 0.739
gutB
Unannotated protein.
 
     0.706
NudL_2
Unannotated protein; Belongs to the Nudix hydrolase family.
 
     0.690
GCA_002013645_01007
Unannotated protein.
 
    0.677
GCA_002013645_04004
Unannotated protein.
 
     0.667
srpA
Unannotated protein; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
 
 
 0.583
GCA_002013645_04651
Unannotated protein.
  
  
 0.562
ytnP
Unannotated protein.
  
   0.553
Your Current Organism:
Mycobacteroides salmoniphilum
NCBI taxonomy Id: 404941
Other names: ATCC 13758, DSM 43276, M. salmoniphilum, Mycobacterium salmoniphilum, Mycobacteroides salmoniphilum (Whipps et al. 2007) Gupta et al. 2018, strain SC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.