STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002013645_02225Unannotated protein; Belongs to the cytochrome P450 family. (449 aa)    
Predicted Functional Partners:
GCA_002013645_02227
Unannotated protein; Belongs to the cytochrome P450 family.
 
  
 0.992
subB
Unannotated protein.
 
  
 0.989
GCA_002013645_02223
Unannotated protein.
 
    0.988
dhbA_1
Unannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.985
cmdD
Unannotated protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.966
GCA_002013645_02228
Unannotated protein.
 
     0.965
garR
Unannotated protein.
 
    0.901
ppsA
Unannotated protein.
  
 0.882
GCA_002013645_02232
Unannotated protein.
 
  
 0.881
GCA_002013645_02233
Unannotated protein.
 
   
 0.874
Your Current Organism:
Mycobacteroides salmoniphilum
NCBI taxonomy Id: 404941
Other names: ATCC 13758, DSM 43276, M. salmoniphilum, Mycobacterium salmoniphilum, Mycobacteroides salmoniphilum (Whipps et al. 2007) Gupta et al. 2018, strain SC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.