STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002013645_03008Unannotated protein. (292 aa)    
Predicted Functional Partners:
GCA_002013645_03007
Unannotated protein.
     0.980
slmA_2
Unannotated protein.
  
    0.629
GCA_002013645_03006
Unannotated protein.
       0.618
GCA_002013645_03009
Unannotated protein.
       0.535
tetC_2
Unannotated protein.
  
    0.485
carD
Unannotated protein.
  
    0.479
tuf
Unannotated protein; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
    0.424
rpsA_2
Unannotated protein.
   
    0.422
lldD
Unannotated protein.
  
  
 0.418
GCA_002013645_03632
Unannotated protein.
  
  
 0.418
Your Current Organism:
Mycobacteroides salmoniphilum
NCBI taxonomy Id: 404941
Other names: ATCC 13758, DSM 43276, M. salmoniphilum, Mycobacterium salmoniphilum, Mycobacteroides salmoniphilum (Whipps et al. 2007) Gupta et al. 2018, strain SC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.