STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX93027.1Uncharacterized protein YcnI. (247 aa)    
Predicted Functional Partners:
SDX93058.1
Copper transport protein.
 
  
 0.995
SDY94695.1
Copper transport protein.
 
  
 0.827
SDZ40467.1
Hypothetical protein.
  
  
 0.673
SDX93089.1
Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain.
       0.667
SDX92996.1
Hypothetical protein.
       0.482
SDX93201.1
Hypothetical protein.
 
     0.481
SDX93116.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.474
SDZ33863.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.429
SDZ33496.1
Protein of unknown function.
  
     0.415
Your Current Organism:
Micromonospora pattaloongensis
NCBI taxonomy Id: 405436
Other names: DSM 45245, JCM 12833, M. pattaloongensis, Micromonospora pattaloongensis Thawai et al. 2008, strain TJ2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.