STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDX97916.1Hypothetical protein. (262 aa)    
Predicted Functional Partners:
SDZ36892.1
Signal transduction histidine kinase.
   
 0.899
SDZ30129.1
PAS domain S-box-containing protein.
   
 0.887
SDY40250.1
Signal transduction histidine kinase.
  
 0.877
SDY80464.1
Response regulator receiver domain-containing protein.
   
 0.845
SDZ11389.1
Signal transduction histidine kinase.
    
 0.805
SDY90110.1
PAS domain S-box-containing protein.
   
 0.772
SDY47335.1
Hypothetical protein.
  
     0.745
SDY52595.1
Signal transduction histidine kinase.
 
  
 0.734
SDY79829.1
HAMP domain-containing protein.
    
 0.727
SDY45354.1
Hypothetical protein.
  
  
  0.725
Your Current Organism:
Micromonospora pattaloongensis
NCBI taxonomy Id: 405436
Other names: DSM 45245, JCM 12833, M. pattaloongensis, Micromonospora pattaloongensis Thawai et al. 2008, strain TJ2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.