STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY04693.1PH domain-containing protein. (287 aa)    
Predicted Functional Partners:
SDY04721.1
Hypothetical protein.
       0.915
SDY04746.1
Hypothetical protein.
       0.669
SDY71362.1
Phospho-glucose isomerase C-terminal SIS domain-containing protein.
  
     0.655
SDY79739.1
Hypothetical protein.
 
     0.654
SDY00556.1
PH domain-containing protein.
 
  
0.634
SDY12225.1
Hypothetical protein.
  
     0.624
SDY12191.1
DNA helicase HerA, contains HAS-barrel and ATPase domains.
  
     0.621
SDZ06142.1
DNA polymerase-3 subunit epsilon.
 
     0.621
SDZ41454.1
Putative sensory transduction regulator.
  
     0.606
SDY10840.1
Protein of unknown function.
  
     0.596
Your Current Organism:
Micromonospora pattaloongensis
NCBI taxonomy Id: 405436
Other names: DSM 45245, JCM 12833, M. pattaloongensis, Micromonospora pattaloongensis Thawai et al. 2008, strain TJ2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.