STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY07398.1Transcriptional regulator, LacI family. (338 aa)    
Predicted Functional Partners:
SDZ09036.1
Glutamate synthase (NADH) large subunit.
    
 
 0.908
SDY43362.1
HxxPF-repeated domain-containing protein.
    
 
 0.884
SDY43671.1
Amino acid adenylation domain-containing protein.
    
   0.880
SDY43807.1
Amino acid adenylation domain-containing protein.
    
   0.880
SDY07307.1
Cellobiose transport system permease protein.
 
     0.740
SDY07366.1
Broad-specificity cellobiase.
   
  0.718
SDY07336.1
Cellobiose ABC transporter membrane protein.
       0.705
SDY43639.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
    
   0.590
SDY07274.1
Cellobiose-binding protein.
 
     0.544
SDY74412.1
Sulfate adenylyltransferase.
    
   0.514
Your Current Organism:
Micromonospora pattaloongensis
NCBI taxonomy Id: 405436
Other names: DSM 45245, JCM 12833, M. pattaloongensis, Micromonospora pattaloongensis Thawai et al. 2008, strain TJ2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.