SDY50162.1 protein (Micromonospora pattaloongensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDY50162.1

Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family. (311 aa)

Predicted Functional Partners:

SDY50190.1

0.998

SDY50130.1

0.994

SDY50224.1

0.994

SDZ30129.1

0.942

SDZ32057.1

0.915

SDY93891.1

0.914

SDZ09429.1

0.914

SDY93868.1

0.908

SDZ09405.1

0.903

SDZ32040.1

0.870

Your Current Organism:

Micromonospora pattaloongensis

NCBI taxonomy Id: 405436
Other names: DSM 45245, JCM 12833, M. pattaloongensis, Micromonospora pattaloongensis Thawai et al. 2008, strain TJ2-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDY50130.1	SDY50162.1	SAMN05444365_102455	SAMN05444365_102456	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.994
SDY50130.1	SDY50190.1	SAMN05444365_102455	SAMN05444365_102457	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter membrane protein 1, PAAT family.	0.999
SDY50130.1	SDY50224.1	SAMN05444365_102455	SAMN05444365_102458	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter membrane protein 2, PAAT family.	0.999
SDY50130.1	SDY93868.1	SAMN05444365_102455	SAMN05444365_104231	Amino acid ABC transporter ATP-binding protein, PAAT family.	Polar amino acid transport system permease protein.	0.969
SDY50130.1	SDZ09405.1	SAMN05444365_102455	SAMN05444365_105283	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.954
SDY50130.1	SDZ32040.1	SAMN05444365_102455	SAMN05444365_11022	Amino acid ABC transporter ATP-binding protein, PAAT family.	Amino acid ABC transporter membrane protein, PAAT family.	0.930
SDY50162.1	SDY50130.1	SAMN05444365_102456	SAMN05444365_102455	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.994
SDY50162.1	SDY50190.1	SAMN05444365_102456	SAMN05444365_102457	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter membrane protein 1, PAAT family.	0.998
SDY50162.1	SDY50224.1	SAMN05444365_102456	SAMN05444365_102458	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter membrane protein 2, PAAT family.	0.994
SDY50162.1	SDY93868.1	SAMN05444365_102456	SAMN05444365_104231	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	Polar amino acid transport system permease protein.	0.908
SDY50162.1	SDY93891.1	SAMN05444365_102456	SAMN05444365_104232	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.914
SDY50162.1	SDZ09405.1	SAMN05444365_102456	SAMN05444365_105283	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter membrane protein, PAAT family.	0.903
SDY50162.1	SDZ09429.1	SAMN05444365_102456	SAMN05444365_105284	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.914
SDY50162.1	SDZ30129.1	SAMN05444365_102456	SAMN05444365_109144	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	PAS domain S-box-containing protein.	0.942
SDY50162.1	SDZ32040.1	SAMN05444365_102456	SAMN05444365_11022	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter membrane protein, PAAT family.	0.870
SDY50162.1	SDZ32057.1	SAMN05444365_102456	SAMN05444365_11023	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.915
SDY50190.1	SDY50130.1	SAMN05444365_102457	SAMN05444365_102455	Amino acid ABC transporter membrane protein 1, PAAT family.	Amino acid ABC transporter ATP-binding protein, PAAT family.	0.999
SDY50190.1	SDY50162.1	SAMN05444365_102457	SAMN05444365_102456	Amino acid ABC transporter membrane protein 1, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family.	0.998
SDY50190.1	SDY50224.1	SAMN05444365_102457	SAMN05444365_102458	Amino acid ABC transporter membrane protein 1, PAAT family.	Amino acid ABC transporter membrane protein 2, PAAT family.	0.998
SDY50190.1	SDY93868.1	SAMN05444365_102457	SAMN05444365_104231	Amino acid ABC transporter membrane protein 1, PAAT family.	Polar amino acid transport system permease protein.	0.780

page 1 of 4

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About