STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY65603.1Glutamate dehydrogenase. (1696 aa)    
Predicted Functional Partners:
SDY95181.1
FHA domain-containing protein.
    
 
 0.977
SDZ09036.1
Glutamate synthase (NADH) large subunit.
     
 0.966
SDZ05165.1
Glutamine synthetase.
     
 0.944
SDY52746.1
L-glutamine synthetase.
     
 0.938
SDZ05032.1
Glutamine synthetase.
     
 0.934
SDX96123.1
2-oxoglutarate dehydrogenase E1 component.
   
 
 0.928
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.927
SDZ38491.1
Citrate synthase; Belongs to the citrate synthase family.
     
 0.922
SDZ27898.1
Citrate synthase; Belongs to the citrate synthase family.
     
 0.921
SDZ09061.1
Glutamate synthase (NADPH/NADH) small chain.
     
 0.898
Your Current Organism:
Micromonospora pattaloongensis
NCBI taxonomy Id: 405436
Other names: DSM 45245, JCM 12833, M. pattaloongensis, Micromonospora pattaloongensis Thawai et al. 2008, strain TJ2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.