STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY93603.1Protein of unknown function. (67 aa)    
Predicted Functional Partners:
SDY93644.1
Helix-turn-helix domain-containing protein.
 
     0.908
SDX91303.1
Helix-turn-helix domain-containing protein.
 
     0.776
SDY23674.1
Helix-turn-helix domain-containing protein.
  
     0.773
SDY20650.1
Helix-turn-helix domain-containing protein.
 
     0.772
SDY51537.1
Helix-turn-helix domain-containing protein.
  
     0.772
SDZ26484.1
Protein of unknown function.
  
     0.772
SDY10547.1
Helix-turn-helix domain-containing protein.
  
     0.770
SDX97765.1
Helix-turn-helix domain-containing protein.
  
     0.769
SDZ17520.1
Helix-turn-helix domain-containing protein.
  
     0.767
SDX90342.1
Helix-turn-helix domain-containing protein.
  
     0.762
Your Current Organism:
Micromonospora pattaloongensis
NCBI taxonomy Id: 405436
Other names: DSM 45245, JCM 12833, M. pattaloongensis, Micromonospora pattaloongensis Thawai et al. 2008, strain TJ2-2
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