Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ07726.1 | SDZ29514.1 | SAMN05444365_105202 | SAMN05444365_109107 | Cell division protein FtsQ; Essential cell division protein. | Cyanophycin synthetase. | 0.925 |
SDZ07726.1 | ddl-2 | SAMN05444365_105202 | SAMN05444365_102632 | Cell division protein FtsQ; Essential cell division protein. | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.775 |
SDZ07726.1 | mraY | SAMN05444365_105202 | SAMN05444365_105198 | Cell division protein FtsQ; Essential cell division protein. | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.730 |
SDZ07726.1 | murB | SAMN05444365_105202 | SAMN05444365_101575 | Cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.695 |
SDZ07726.1 | murC | SAMN05444365_105202 | SAMN05444365_105201 | Cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.991 |
SDZ07726.1 | murD | SAMN05444365_105202 | SAMN05444365_105415 | Cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.934 |
SDZ07726.1 | murE | SAMN05444365_105202 | SAMN05444365_105196 | Cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.819 |
SDZ07726.1 | murF | SAMN05444365_105202 | SAMN05444365_105197 | Cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.962 |
SDZ07726.1 | murG | SAMN05444365_105202 | SAMN05444365_105200 | Cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.981 |
SDZ12068.1 | murD | SAMN05444365_105414 | SAMN05444365_105415 | Hypothetical protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.998 |
SDZ29514.1 | SDZ07726.1 | SAMN05444365_109107 | SAMN05444365_105202 | Cyanophycin synthetase. | Cell division protein FtsQ; Essential cell division protein. | 0.925 |
SDZ29514.1 | ddl-2 | SAMN05444365_109107 | SAMN05444365_102632 | Cyanophycin synthetase. | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.412 |
SDZ29514.1 | mraY | SAMN05444365_109107 | SAMN05444365_105198 | Cyanophycin synthetase. | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.953 |
SDZ29514.1 | murB | SAMN05444365_109107 | SAMN05444365_101575 | Cyanophycin synthetase. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.807 |
SDZ29514.1 | murC | SAMN05444365_109107 | SAMN05444365_105201 | Cyanophycin synthetase. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.960 |
SDZ29514.1 | murD | SAMN05444365_109107 | SAMN05444365_105415 | Cyanophycin synthetase. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.973 |
SDZ29514.1 | murE | SAMN05444365_109107 | SAMN05444365_105196 | Cyanophycin synthetase. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.412 |
SDZ29514.1 | murF | SAMN05444365_109107 | SAMN05444365_105197 | Cyanophycin synthetase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.965 |
SDZ29514.1 | murG | SAMN05444365_109107 | SAMN05444365_105200 | Cyanophycin synthetase. | UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.921 |
ddl-2 | SDZ07726.1 | SAMN05444365_102632 | SAMN05444365_105202 | D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | Cell division protein FtsQ; Essential cell division protein. | 0.775 |
page 1 of 5