SDZ21273.1 protein (Micromonospora pattaloongensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDZ21273.1

PucR C-terminal helix-turn-helix domain-containing protein. (388 aa)

Predicted Functional Partners:

SDZ41701.1

0.668

SDZ37846.1

0.660

SDY71013.1

0.632

SDZ15771.1

0.539

SDZ15788.1

0.538

SDZ16254.1

0.530

SDZ42352.1

0.521

SDZ21257.1

0.519

SDY37533.1

0.512

SDY93185.1

0.482

Your Current Organism:

Micromonospora pattaloongensis

NCBI taxonomy Id: 405436
Other names: DSM 45245, JCM 12833, M. pattaloongensis, Micromonospora pattaloongensis Thawai et al. 2008, strain TJ2-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDY37533.1	SDZ16254.1	SAMN05444365_10250	SAMN05444365_10696	Hypothetical protein.	Glucose/arabinose dehydrogenase, beta-propeller fold.	0.555
SDY37533.1	SDZ21273.1	SAMN05444365_10250	SAMN05444365_10793	Hypothetical protein.	PucR C-terminal helix-turn-helix domain-containing protein.	0.512
SDY37533.1	SDZ42352.1	SAMN05444365_10250	SAMN05444365_11511	Hypothetical protein.	Animal haem peroxidase.	0.605
SDY71013.1	SDZ15771.1	SAMN05444365_103210	SAMN05444365_10672	Hypothetical protein.	Protein of unknown function.	0.465
SDY71013.1	SDZ15788.1	SAMN05444365_103210	SAMN05444365_10673	Hypothetical protein.	Protein of unknown function.	0.454
SDY71013.1	SDZ21273.1	SAMN05444365_103210	SAMN05444365_10793	Hypothetical protein.	PucR C-terminal helix-turn-helix domain-containing protein.	0.632
SDY93185.1	SDZ21273.1	SAMN05444365_104198	SAMN05444365_10793	Hypothetical protein.	PucR C-terminal helix-turn-helix domain-containing protein.	0.482
SDZ15771.1	SDY71013.1	SAMN05444365_10672	SAMN05444365_103210	Protein of unknown function.	Hypothetical protein.	0.465
SDZ15771.1	SDZ15788.1	SAMN05444365_10672	SAMN05444365_10673	Protein of unknown function.	Protein of unknown function.	0.597
SDZ15771.1	SDZ21273.1	SAMN05444365_10672	SAMN05444365_10793	Protein of unknown function.	PucR C-terminal helix-turn-helix domain-containing protein.	0.539
SDZ15788.1	SDY71013.1	SAMN05444365_10673	SAMN05444365_103210	Protein of unknown function.	Hypothetical protein.	0.454
SDZ15788.1	SDZ15771.1	SAMN05444365_10673	SAMN05444365_10672	Protein of unknown function.	Protein of unknown function.	0.597
SDZ15788.1	SDZ21273.1	SAMN05444365_10673	SAMN05444365_10793	Protein of unknown function.	PucR C-terminal helix-turn-helix domain-containing protein.	0.538
SDZ16254.1	SDY37533.1	SAMN05444365_10696	SAMN05444365_10250	Glucose/arabinose dehydrogenase, beta-propeller fold.	Hypothetical protein.	0.555
SDZ16254.1	SDZ21273.1	SAMN05444365_10696	SAMN05444365_10793	Glucose/arabinose dehydrogenase, beta-propeller fold.	PucR C-terminal helix-turn-helix domain-containing protein.	0.530
SDZ21257.1	SDZ21273.1	SAMN05444365_10792	SAMN05444365_10793	Hypothetical protein.	PucR C-terminal helix-turn-helix domain-containing protein.	0.519
SDZ21273.1	SDY37533.1	SAMN05444365_10793	SAMN05444365_10250	PucR C-terminal helix-turn-helix domain-containing protein.	Hypothetical protein.	0.512
SDZ21273.1	SDY71013.1	SAMN05444365_10793	SAMN05444365_103210	PucR C-terminal helix-turn-helix domain-containing protein.	Hypothetical protein.	0.632
SDZ21273.1	SDY93185.1	SAMN05444365_10793	SAMN05444365_104198	PucR C-terminal helix-turn-helix domain-containing protein.	Hypothetical protein.	0.482
SDZ21273.1	SDZ15771.1	SAMN05444365_10793	SAMN05444365_10672	PucR C-terminal helix-turn-helix domain-containing protein.	Protein of unknown function.	0.539