STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ28128.1Chitin-binding protein. (291 aa)    
Predicted Functional Partners:
SDZ06745.1
Chitinase family 18; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.767
SDX95084.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.657
SDY88520.1
Predicted chitinase.
 
  
 0.612
SDX92250.1
Cellulose 1,4-beta-cellobiosidase; Belongs to the glycosyl hydrolase family 6.
  
     0.579
SDY38921.1
Mannan endo-1,4-beta-mannosidase.
 
     0.510
SDX95053.1
Fibronectin type III domain-containing protein.
 
    0.506
SDZ28146.1
Transcriptional regulator, TetR family.
       0.476
SDY88718.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.469
SDY41673.1
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.465
SDZ16416.1
Streptogrisin C. Serine peptidase. MEROPS family S01A.
  
     0.433
Your Current Organism:
Micromonospora pattaloongensis
NCBI taxonomy Id: 405436
Other names: DSM 45245, JCM 12833, M. pattaloongensis, Micromonospora pattaloongensis Thawai et al. 2008, strain TJ2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.