STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ35458.1Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (118 aa)    
Predicted Functional Partners:
SDZ36906.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.996
SDZ36976.1
Histidine kinase-like ATPase domain-containing protein.
  
 0.983
SDZ35442.1
Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
  0.966
SDZ30129.1
PAS domain S-box-containing protein.
 
 
 0.924
SDZ11389.1
Signal transduction histidine kinase.
 
 
 0.908
SDY52595.1
Signal transduction histidine kinase.
  
 0.901
SDZ33918.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
  0.865
SDY21744.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
  0.819
SDZ29229.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
  0.795
SDY90110.1
PAS domain S-box-containing protein.
 
 
 0.791
Your Current Organism:
Micromonospora pattaloongensis
NCBI taxonomy Id: 405436
Other names: DSM 45245, JCM 12833, M. pattaloongensis, Micromonospora pattaloongensis Thawai et al. 2008, strain TJ2-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.