Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS68949.1 | SIS68965.1 | SAMN05421772_1036 | SAMN05421772_1037 | Shikimate dehydrogenase. | Glycerol dehydrogenase. | 0.793 |
SIS68949.1 | SIS68986.1 | SAMN05421772_1036 | SAMN05421772_1039 | Shikimate dehydrogenase. | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.749 |
SIS68949.1 | SIS69014.1 | SAMN05421772_1036 | SAMN05421772_10311 | Shikimate dehydrogenase. | Transcriptional regulator, GntR family. | 0.753 |
SIS68949.1 | SIS72145.1 | SAMN05421772_1036 | SAMN05421772_103262 | Shikimate dehydrogenase. | Anthranilate synthase, component II. | 0.783 |
SIS68949.1 | aroA | SAMN05421772_1036 | SAMN05421772_11167 | Shikimate dehydrogenase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.910 |
SIS68949.1 | aroB | SAMN05421772_1036 | SAMN05421772_102265 | Shikimate dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.805 |
SIS68949.1 | aroC | SAMN05421772_1036 | SAMN05421772_101232 | Shikimate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.837 |
SIS68949.1 | aroE | SAMN05421772_1036 | SAMN05421772_10133 | Shikimate dehydrogenase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.916 |
SIS68949.1 | aroK | SAMN05421772_1036 | SAMN05421772_102266 | Shikimate dehydrogenase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.954 |
SIS68949.1 | aroQ | SAMN05421772_1036 | SAMN05421772_105228 | Shikimate dehydrogenase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.895 |
SIS68965.1 | SIS68949.1 | SAMN05421772_1037 | SAMN05421772_1036 | Glycerol dehydrogenase. | Shikimate dehydrogenase. | 0.793 |
SIS68965.1 | SIS68986.1 | SAMN05421772_1037 | SAMN05421772_1039 | Glycerol dehydrogenase. | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.776 |
SIS68965.1 | SIS69014.1 | SAMN05421772_1037 | SAMN05421772_10311 | Glycerol dehydrogenase. | Transcriptional regulator, GntR family. | 0.776 |
SIS68986.1 | SIS68949.1 | SAMN05421772_1039 | SAMN05421772_1036 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Shikimate dehydrogenase. | 0.749 |
SIS68986.1 | SIS68965.1 | SAMN05421772_1039 | SAMN05421772_1037 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Glycerol dehydrogenase. | 0.776 |
SIS68986.1 | SIS69014.1 | SAMN05421772_1039 | SAMN05421772_10311 | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | Transcriptional regulator, GntR family. | 0.747 |
SIS69014.1 | SIS68949.1 | SAMN05421772_10311 | SAMN05421772_1036 | Transcriptional regulator, GntR family. | Shikimate dehydrogenase. | 0.753 |
SIS69014.1 | SIS68965.1 | SAMN05421772_10311 | SAMN05421772_1037 | Transcriptional regulator, GntR family. | Glycerol dehydrogenase. | 0.776 |
SIS69014.1 | SIS68986.1 | SAMN05421772_10311 | SAMN05421772_1039 | Transcriptional regulator, GntR family. | L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. | 0.747 |
SIS72145.1 | SIS68949.1 | SAMN05421772_103262 | SAMN05421772_1036 | Anthranilate synthase, component II. | Shikimate dehydrogenase. | 0.783 |
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