STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS90152.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (344 aa)    
Predicted Functional Partners:
SIS90124.1
TRAP transporter, DctM subunit.
 
 
  0.992
SIS90141.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.903
SIS55003.1
C4-dicarboxylate transporter, DctM subunit.
  
    0.765
SIS56127.1
TRAP transporter, DctM subunit.
  
    0.747
SIS95900.1
TRAP transporter, DctM subunit.
  
    0.745
SIS69766.1
TRAP transporter, DctM subunit.
  
    0.728
SIS69559.1
TRAP transporter, DctM subunit.
  
    0.720
SIS61800.1
TRAP transporter, DctM subunit.
  
    0.714
SIS69050.1
TRAP transporter, DctM subunit.
  
    0.712
SIS56112.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.706
Your Current Organism:
Paracoccus saliphilus
NCBI taxonomy Id: 405559
Other names: CCTCC AB 206074, DSM 18447, KCTC 22163, P. saliphilus, Paracoccus saliphilus Wang et al. 2009, YIM 90738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.