STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT00973.1Ribosomal protein S18 acetylase RimI. (167 aa)    
Predicted Functional Partners:
SIT00961.1
Hint domain-containing protein.
       0.664
SIS69238.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.482
SIS69411.1
Cupin domain-containing protein.
  
 
 0.459
SIS69424.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.459
SIS94287.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.459
SIT12908.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.459
SIT16477.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.459
SIT00949.1
Transcriptional regulator, AraC family with amidase-like domain.
  
    0.428
Your Current Organism:
Paracoccus saliphilus
NCBI taxonomy Id: 405559
Other names: CCTCC AB 206074, DSM 18447, KCTC 22163, P. saliphilus, Paracoccus saliphilus Wang et al. 2009, YIM 90738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.