Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIT17456.1 | SIT17463.1 | SAMN05421772_13116 | SAMN05421772_13117 | Hypothetical protein. | Hypothetical protein. | 0.490 |
SIT17463.1 | SIT17456.1 | SAMN05421772_13117 | SAMN05421772_13116 | Hypothetical protein. | Hypothetical protein. | 0.490 |
SIT17463.1 | SIT17467.1 | SAMN05421772_13117 | SAMN05421772_13118 | Hypothetical protein. | Zinc transport system permease protein. | 0.444 |
SIT17463.1 | SIT17480.1 | SAMN05421772_13117 | SAMN05421772_13120 | Hypothetical protein. | Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family. | 0.409 |
SIT17463.1 | aroB | SAMN05421772_13117 | SAMN05421772_102265 | Hypothetical protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.408 |
SIT17463.1 | nusA | SAMN05421772_13117 | SAMN05421772_107141 | Hypothetical protein. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.453 |
SIT17463.1 | uvrA | SAMN05421772_13117 | SAMN05421772_11155 | Hypothetical protein. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.708 |
SIT17463.1 | znuC | SAMN05421772_13117 | SAMN05421772_13119 | Hypothetical protein. | Zinc transport system ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.409 |
SIT17467.1 | SIT17463.1 | SAMN05421772_13118 | SAMN05421772_13117 | Zinc transport system permease protein. | Hypothetical protein. | 0.444 |
SIT17467.1 | SIT17480.1 | SAMN05421772_13118 | SAMN05421772_13120 | Zinc transport system permease protein. | Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family. | 0.878 |
SIT17467.1 | znuC | SAMN05421772_13118 | SAMN05421772_13119 | Zinc transport system permease protein. | Zinc transport system ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.999 |
SIT17480.1 | SIT17463.1 | SAMN05421772_13120 | SAMN05421772_13117 | Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family. | Hypothetical protein. | 0.409 |
SIT17480.1 | SIT17467.1 | SAMN05421772_13120 | SAMN05421772_13118 | Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family. | Zinc transport system permease protein. | 0.878 |
SIT17480.1 | znuC | SAMN05421772_13120 | SAMN05421772_13119 | Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family. | Zinc transport system ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.987 |
aroB | SIT17463.1 | SAMN05421772_102265 | SAMN05421772_13117 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Hypothetical protein. | 0.408 |
nusA | SIT17463.1 | SAMN05421772_107141 | SAMN05421772_13117 | NusA antitermination factor; Participates in both transcription termination and antitermination. | Hypothetical protein. | 0.453 |
uvrA | SIT17463.1 | SAMN05421772_11155 | SAMN05421772_13117 | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | Hypothetical protein. | 0.708 |
znuC | SIT17463.1 | SAMN05421772_13119 | SAMN05421772_13117 | Zinc transport system ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | Hypothetical protein. | 0.409 |
znuC | SIT17467.1 | SAMN05421772_13119 | SAMN05421772_13118 | Zinc transport system ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | Zinc transport system permease protein. | 0.999 |
znuC | SIT17480.1 | SAMN05421772_13119 | SAMN05421772_13120 | Zinc transport system ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family. | 0.987 |