STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO96462.1Protein of unknown function. (66 aa)    
Predicted Functional Partners:
SDO96491.1
Helix-turn-helix domain-containing protein.
 
     0.907
SDO96437.1
Hypothetical protein.
 
     0.871
SDO93191.1
Helix-turn-helix domain-containing protein.
  
     0.734
SDP84416.1
Protein of unknown function.
  
     0.725
SDP80717.1
Helix-turn-helix domain-containing protein.
  
     0.723
SDO95664.1
Helix-turn-helix domain-containing protein.
  
     0.719
SDP30654.1
Helix-turn-helix domain-containing protein.
  
     0.712
SDO88732.1
Protein of unknown function.
  
     0.709
SDP02516.1
Transcriptional regulator, XRE family.
  
     0.709
SDP85173.1
Helix-turn-helix domain-containing protein.
  
     0.709
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.