STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO90013.1Hypothetical protein. (319 aa)    
Predicted Functional Partners:
SDO90046.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.825
SDP93346.1
Hypothetical protein.
  
     0.718
SDP78476.1
Hypothetical protein.
  
     0.714
SDO88470.1
Glycosyltransferase, GT2 family.
  
     0.707
SDP95338.1
Hypothetical protein.
  
     0.700
SDP64508.1
Hypothetical protein.
  
     0.699
SDP81393.1
Hypothetical protein.
  
     0.697
SDP44240.1
Hypothetical protein.
  
     0.686
SDP87146.1
Hypothetical protein.
  
     0.658
SDP14429.1
Hypothetical protein.
  
     0.649
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.