STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP15817.1Short repeat-containing protein of unknown function. (1097 aa)    
Predicted Functional Partners:
SDP88577.1
FG-GAP repeat-containing protein.
  
     0.762
SDP62609.1
Ferredoxin.
  
     0.727
SDO94235.1
Hypothetical protein.
  
     0.646
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.622
SDP83375.1
Patatin-related protein.
  
     0.573
SDP46649.1
Protein of unknown function.
  
 
  0.560
SDP46786.1
GDSL-like Lipase/Acylhydrolase family protein.
  
  0.560
SDP46712.1
O-antigen ligase like membrane protein.
  
     0.544
SDP15789.1
Hypothetical protein.
       0.539
SDP00851.1
Lysophospholipase L1.
   
  0.498
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.