STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP21045.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (237 aa)    
Predicted Functional Partners:
SDP21083.1
Signal transduction histidine kinase.
 
  0.943
SDP54443.1
Hypothetical protein.
 0.937
SDO97408.1
Two-component system, OmpR family, sensor kinase.
 
 0.935
SDP86921.1
Two-component system, OmpR family, sensor histidine kinase SenX3.
 0.934
SDO88174.1
Two-component system, OmpR family, sensor histidine kinase MtrB.
 0.899
SDO94085.1
Two-component system, OmpR family, sensor histidine kinase MprB.
 
 0.888
SDP69047.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.788
SDP87043.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.788
SDO90267.1
Signal transduction histidine kinase.
 
  0.786
SDP88366.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.712
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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