STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP31886.1Sulfate permease, SulP family. (536 aa)    
Predicted Functional Partners:
SDP53976.1
Protein tyrosine/serine phosphatase.
    
   0.869
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.854
SDP87746.1
NADH-quinone oxidoreductase subunit M.
  
 
 0.838
SDP88682.1
Mce-associated membrane protein.
    
 
 0.824
SDP88690.1
Hypothetical protein.
    
 
 0.824
SDP52856.1
Menaquinol-cytochrome c reductase cytochrome b subunit precursor.
    
   0.816
SDP92265.1
Ubiquinol-cytochrome c reductase cytochrome b subunit.
    
   0.816
SDP93772.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.802
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.768
SDP04079.1
Carbonic anhydrase.
  
 
 0.758
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.