STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP54274.1Protein of unknown function. (211 aa)    
Predicted Functional Partners:
SDP54241.1
Protein of unknown function.
 
     0.739
rbpA
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.734
SDP54256.1
Protein of unknown function.
 
     0.728
SDP62768.1
DNA polymerase III, delta subunit.
  
     0.689
SDP52242.1
Protein of unknown function.
  
     0.687
SDP91741.1
MerR HTH family regulatory protein.
  
     0.683
SDP54311.1
Protein of unknown function.
 
     0.682
SDP80148.1
Hypothetical protein.
  
     0.659
SDP44417.1
YggT family protein.
  
     0.644
SDP53641.1
Protein of unknown function.
  
     0.643
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
Server load: low (12%) [HD]