STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP53584.1Glutamate transport system ATP-binding protein. (251 aa)    
Predicted Functional Partners:
SDP53525.1
Glutamate transport system permease protein.
 0.996
SDP53547.1
Glutamate transport system permease protein.
 0.996
SDP53568.1
Glutamate transport system substrate-binding protein.
 
 0.989
SDP81457.1
Polar amino acid transport system permease protein.
 0.972
SDP81476.1
Polar amino acid transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.962
SDP65029.1
Hypothetical protein.
  
 0.869
SDP43769.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.841
SDP74637.1
ATP-binding cassette, subfamily B.
 
    
0.838
SDP93772.1
Glutamate synthase (NADPH/NADH) large chain.
  
  
 0.542
SDP53511.1
Hypothetical protein.
  
 0.513
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.