STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP62460.1Hypothetical protein. (185 aa)    
Predicted Functional Partners:
SDP62445.1
Hypothetical protein.
 
     0.920
SDP62477.1
Hypothetical protein.
      0.815
SDP93822.1
Putative Mg2+ transporter-C (MgtC) family protein.
  
  
 0.756
SDP74584.1
Zn-dependent protease with chaperone function.
  
     0.523
SDP54470.1
Putative restriction endonuclease.
  
     0.517
SDP42924.1
Transcriptional regulator, TetR family.
  
     0.488
SDP69789.1
Hypothetical protein.
  
     0.478
SDP84675.1
Acetyltransferase (GNAT) family protein.
  
     0.474
SDO97259.1
Acyl-coenzyme A thioesterase PaaI, contains HGG motif.
  
     0.441
SDP90801.1
Hypothetical protein.
  
     0.437
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.