Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDP67161.1 | era | SAMN04487905_1073 | SAMN04487905_106185 | AAA ATPase domain-containing protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.901 |
| SDP67161.1 | rpsB | SAMN04487905_1073 | SAMN04487905_104261 | AAA ATPase domain-containing protein. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.994 |
| SDP67161.1 | rpsE | SAMN04487905_1073 | SAMN04487905_10239 | AAA ATPase domain-containing protein. | Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.994 |
| SDP67161.1 | rpsG | SAMN04487905_1073 | SAMN04487905_10218 | AAA ATPase domain-containing protein. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.994 |
| SDP67161.1 | rpsI | SAMN04487905_1073 | SAMN04487905_10270 | AAA ATPase domain-containing protein. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.994 |
| SDP67161.1 | rpsJ | SAMN04487905_1073 | SAMN04487905_10221 | AAA ATPase domain-containing protein. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.994 |
| SDP67161.1 | rpsO | SAMN04487905_1073 | SAMN04487905_104181 | AAA ATPase domain-containing protein. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.993 |
| SDP67161.1 | rpsP | SAMN04487905_1073 | SAMN04487905_104275 | AAA ATPase domain-containing protein. | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.994 |
| SDP67161.1 | rpsZ | SAMN04487905_1073 | SAMN04487905_10235 | AAA ATPase domain-containing protein. | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.994 |
| era | SDP67161.1 | SAMN04487905_106185 | SAMN04487905_1073 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | AAA ATPase domain-containing protein. | 0.901 |
| era | rpsB | SAMN04487905_106185 | SAMN04487905_104261 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.898 |
| era | rpsE | SAMN04487905_106185 | SAMN04487905_10239 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Small subunit ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.908 |
| era | rpsF | SAMN04487905_106185 | SAMN04487905_109144 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.924 |
| era | rpsG | SAMN04487905_106185 | SAMN04487905_10218 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Small subunit ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.939 |
| era | rpsI | SAMN04487905_106185 | SAMN04487905_10270 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.932 |
| era | rpsJ | SAMN04487905_106185 | SAMN04487905_10221 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.920 |
| era | rpsO | SAMN04487905_106185 | SAMN04487905_104181 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.911 |
| era | rpsP | SAMN04487905_106185 | SAMN04487905_104275 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Small subunit ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.963 |
| era | rpsZ | SAMN04487905_106185 | SAMN04487905_10235 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.898 |
| rpsB | SDP67161.1 | SAMN04487905_104261 | SAMN04487905_1073 | Small subunit ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | AAA ATPase domain-containing protein. | 0.994 |
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