STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP69720.1Conserved DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family. (166 aa)    
Predicted Functional Partners:
SDP69734.1
Hypothetical protein.
 
     0.953
SDP69763.1
Hypothetical protein.
       0.790
SDP69748.1
Hypothetical protein.
       0.786
SDP13588.1
MerR HTH family regulatory protein.
  
     0.713
SDP44240.1
Hypothetical protein.
  
     0.708
SDO88257.1
Hypothetical protein.
  
     0.704
SDP69928.1
Hypothetical protein.
  
     0.704
SDP61749.1
Hypothetical protein.
  
     0.688
SDP96149.1
Hypothetical protein.
  
     0.685
SDP80924.1
Hypothetical protein.
  
     0.684
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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