STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP74888.1Methyltransferase domain-containing protein. (283 aa)    
Predicted Functional Partners:
SDP41990.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
   
  0.795
SDP74872.1
Two component transcriptional regulator, LuxR family.
    
  0.777
SDP18837.1
Polynucleotide kinase-phosphatase.
   
   0.725
SDP46364.1
Magnesium chelatase subunit D.
  
 0.708
SDP74904.1
Hypothetical protein.
       0.664
SDP74920.1
Hypothetical protein.
       0.653
SDP95702.1
AMP-binding enzyme C-terminal domain-containing protein.
  
 0.604
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
  0.593
SDP95708.1
AMP-binding enzyme.
  
 0.464
SDP94388.1
Sarcosine/dimethylglycine N-methyltransferase.
   
 0.424
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.