STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP90415.1Zn-dependent protease (includes SpoIVFB); Belongs to the peptidase M50B family. (378 aa)    
Predicted Functional Partners:
SDP42150.1
Hypothetical protein.
  
    0.828
SDP30258.1
Hypothetical protein.
   
    0.714
SDP32182.1
CBS domain-containing protein.
   
    0.713
SDP90424.1
tRNA (adenine57-N1/adenine58-N1)-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
       0.607
SDP90407.1
Putative RecB family exonuclease.
 
     0.593
SDP94734.1
RES domain-containing protein.
  
     0.538
SDP90398.1
Thioesterase-like superfamily protein.
 
     0.519
SDP94730.1
Hypothetical protein.
  
     0.495
SDP96143.1
Helix-turn-helix.
  
     0.491
SDP65096.1
Hypothetical protein.
  
     0.487
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.