STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP89805.1Hypothetical protein. (758 aa)    
Predicted Functional Partners:
SDP89796.1
Part of AAA domain-containing protein.
 
     0.754
SDP36297.1
Protein of unknown function.
 
     0.690
SDP89786.1
Serine/threonine protein kinase.
       0.578
SDP89615.1
Superfamily II DNA or RNA helicase, SNF2 family.
 
 
   0.540
SDP93772.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.490
SDP16513.1
Hypothetical protein.
  
     0.462
SDP84319.1
Intein N-terminal splicing region/RHS repeat-associated core domain-containing protein.
  
     0.425
SDP03154.1
AAA domain-containing protein.
 
     0.424
SDP83375.1
Patatin-related protein.
  
     0.421
SDP90881.1
Type I restriction enzyme, S subunit.
  
    0.406
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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