STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP93208.1Lipoprotein-anchoring transpeptidase ErfK/SrfK. (279 aa)    
Predicted Functional Partners:
SDP93213.1
Hypothetical protein.
 
     0.644
SDP42744.1
Hypothetical protein.
  
     0.556
SDP91768.1
Fe-S cluster assembly iron-binding protein IscA.
 
     0.528
SDP91610.1
Hypothetical protein.
  
     0.472
SDO89004.1
Protein of unknown function.
  
     0.438
SDO89838.1
Protein of unknown function.
  
     0.425
SDP89832.1
Protein of unknown function.
  
     0.424
SDP71630.1
Hypothetical protein.
  
     0.418
SDP84205.1
Hypothetical protein.
  
     0.414
SDP84416.1
Protein of unknown function.
  
     0.409
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.